PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004901-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 324aa    MW: 36635 Da    PI: 6.7257
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004901-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-28158216259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D++nWrKYG K++kgs++prsYYrC+++ gC+++k+ve+s +dp ++ itY +eH+h+
  AHYPO_004901-RA 158 TDKWNWRKYGEKVIKGSPYPRSYYRCSYPgGCSARKQVEQSCNDPGLFLITYMEEHTHP 216
                      7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28147218IPR003657WRKY domain
PROSITE profilePS5081128.3152218IPR003657WRKY domain
SuperFamilySSF1182906.8E-26155218IPR003657WRKY domain
SMARTSM007742.1E-30157217IPR003657WRKY domain
PfamPF031063.6E-24159216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMSEFSFDRA SDWDLQAIVN GTSICLSSNT TNTNTNTNSN TNTNNSSMMN LPNCYDSWFD  60
SLLEDCCHEN TAFMFVNNLD QESNNHGVLI SNSTQQVAET NSLINFDIYT QTSPHDHTNH  120
KSTSVSCESS RATISKRRKN KHKIIKMVQQ AGGDRILTDK WNWRKYGEKV IKGSPYPRSY  180
YRCSYPGGCS ARKQVEQSCN DPGLFLITYM EEHTHPYPTR RHSQAGRSAK RFNHSSSTKV  240
VIKKNDTQST FVRTPTSESS STNTNNDRLL ILQSDQEDDG NNNNAGYVGG HNQSDCYTNR  300
RVFEDDFFAG LDYLEGLSMN LYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-17148218877Probable WRKY transcription factor 4
2lex_A2e-17148218877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866907.11e-115WRKY transcription factor 22-like
TrEMBLA0A0K9S1611e-117A0A0K9S161_SPIOL; Uncharacterized protein
STRINGXP_010676412.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-21WRKY DNA-binding protein 35