PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004903-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 234aa    MW: 26106.2 Da    PI: 8.59
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004903-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.1e-31154212159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk+s++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+
  AHYPO_004903-RA 154 LDDGYKWRKYGQKSVKNSTHPRSYYRCTYHTCNVKKQIQRHSRDKSIVITTYEGIHNHP 212
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-32141213IPR003657WRKY domain
SuperFamilySSF1182901.16E-27147213IPR003657WRKY domain
PROSITE profilePS5081128.598149214IPR003657WRKY domain
SMARTSM007743.3E-36154213IPR003657WRKY domain
PfamPF031065.9E-25155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MIFTCNDHNH DQLFIQNPFT SSLTHNIISD DINININAKS SCLGLISSPL PQNDLPNLDN  60
IDWISLFCSS NDQHTSLEPS SISVGSSTSP APTNNNNNGQ PSAGEEDHIN KNNAAGFNKG  120
IKPSSVLACS SNSMKKKVVP PRFAFHTKSS EDVLDDGYKW RKYGQKSVKN STHPRSYYRC  180
TYHTCNVKKQ IQRHSRDKSI VITTYEGIHN HPSEKLMETL SPLLKQLQFL SRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23142211271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021754250.15e-88probable WRKY transcription factor 56
TrEMBLA0A1S4B2T72e-59A0A1S4B2T7_TOBAC; probable WRKY transcription factor 75
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.15e-56WRKY DNA-binding protein 56