PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004936-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 343aa    MW: 38335.8 Da    PI: 6.6049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004936-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19121172156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      ++y+GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g+
  AHYPO_004936-RA 121 KKYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRGA 172
                      59********.**********72....45*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.55E-32121178No hitNo description
Gene3DG3DSA:3.30.730.102.3E-30122179IPR001471AP2/ERF domain
PfamPF008478.2E-13122171IPR001471AP2/ERF domain
PROSITE profilePS5103223.644122179IPR001471AP2/ERF domain
SMARTSM003802.5E-36122185IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22122179IPR016177DNA-binding domain
PRINTSPR003671.1E-10123134IPR001471AP2/ERF domain
PRINTSPR003671.1E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
METQKSPEIK FTEHKNQIVI HQKQIKRNSH EKLIIPKIVR ISVTDADATD SSSDEEKCSK  60
RRRVKRFINE VNIEPCSSSY SSVSLSATTE VVNDVVSKKR QRKRRGKCSS VKQVQGITNG  120
KKYRGVRQRP WGKWAAEIRD PLRRVRLWLG TYDTAEEAAM VYDNAAIQLR GAHALTNFSP  180
PKKLSLSSTS SSDEDGSHSH SQNPSSICSP TSVLRFQPDS EPISPKEAQP KPIKEEKELE  240
EEKQVGPTTS PYVSCFDSLF PSDFFDFDGR VPSMPELFGN GGDYGHVFGE DCKTETFLDD  300
HLIDDDFGFG FGFEFSGLTG RSSHDYFPDI GDIFGSDPLV AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22120178362ATERF1
3gcc_A4e-22120178362ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838632.11e-119ethylene-responsive transcription factor CRF2-like
TrEMBLA0A0K9RK751e-118A0A0K9RK75_SPIOL; Uncharacterized protein
STRINGXP_010676352.11e-109(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.29e-46cytokinin response factor 2