PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004956-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 367aa    MW: 40719.2 Da    PI: 5.6531
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004956-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.6e-29129189259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK++ g+++prsYYrCt++   gC ++k+v+r++edp +++itY+geH+++
  AHYPO_004956-RA 129 EDGFSWRKYGQKDILGAKNPRSYYRCTYRniqGCVATKQVQRNDEDPMIFDITYKGEHTCK 189
                      7***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28119189IPR003657WRKY domain
PROSITE profilePS5081122.871123191IPR003657WRKY domain
SuperFamilySSF1182902.75E-25128190IPR003657WRKY domain
SMARTSM007741.9E-40128190IPR003657WRKY domain
PfamPF031063.0E-27129189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEFNCANGNQ QESLIGELTQ GFQLATELKV QMSAEIGETR GVLAERIYSC FQRALLILQW  60
GGGSMEPFNH NLVGSSTMPE SPLSVIGSPK SEDFSPGNHT PKDSRKRKML PTWTAKKRAS  120
SEAVEGAPED GFSWRKYGQK DILGAKNPRS YYRCTYRNIQ GCVATKQVQR NDEDPMIFDI  180
TYKGEHTCKL APRSKSAPTS PQKQVSKKQN NFPVAQYQQQ QQQQQPDLLL NFQTGLKVDI  240
QNLDNQDTGF IFPTTSELTY ENYSFMPSTL DDSQLYNGYA QTIMPSPATS ESTYFSTSPC  300
NISAFGGIHC GHHSESDIGE IISAATSGTN SPIISIDFPS NLYEICNPHF PSDNQTFTNT  360
FSQTKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18129189969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108SRKRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846686.11e-167probable WRKY transcription factor 53
TrEMBLA0A0K9RJ401e-166A0A0K9RJ40_SPIOL; Uncharacterized protein
STRINGXP_010676319.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-47WRKY family protein