PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005119-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 232aa    MW: 24765.8 Da    PI: 7.7375
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005119-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.6e-06827221
                     EETTTTEEESSHHHHHHHHH CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                     +C+ Cgk+F+++  L  H+r
  AHYPO_005119-RA  8 PCTECGKTFTSWKALFGHMR 27
                     5******************8 PP
2zf-C2H212.10.0005878100123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+F+++  L  H  +H
  AHYPO_005119-RA  78 FECSSCKKTFTSHQALGGHRASH 100
                      89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.159734IPR007087Zinc finger, C2H2
SMARTSM003550.0029729IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.46E-9829No hitNo description
Gene3DG3DSA:3.30.160.605.4E-5929IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
PfamPF139127.9E-9931IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-973100No hitNo description
SMARTSM003550.2178100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84578105IPR007087Zinc finger, C2H2
PfamPF139122.5E-978101IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-5146173No hitNo description
PfamPF139125.9E-12146171IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037147174IPR007087Zinc finger, C2H2
SMARTSM003550.28147169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MATEPIPPCT ECGKTFTSWK ALFGHMRCHP EREWRGINPP PHLRRQPLAT STTSDDREVA  60
ASLLLLAGGP VSSDAAKFEC SSCKKTFTSH QALGGHRASH KNVKGCFAIT KNNVEDDHCM  120
GTQTSTQDDA TGLQLSLGLG QGVQTAHKCT ICFKLFPTGQ ALGGHMRCHW EKNEASTSSI  180
GPNIGPSVMP GSQPSKAQNN LDLNVHPQVK DDGSSSSNDS SSMQLELRLG L*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724918.13e-83zinc finger protein ZAT3-like
RefseqXP_021724919.13e-83zinc finger protein ZAT3-like
SwissprotO654995e-67ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A0K9R0275e-75A0A0K9R027_SPIOL; Uncharacterized protein
STRINGXP_010690656.13e-79(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-63C2H2-like zinc finger protein