PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005135-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 350aa    MW: 39144.7 Da    PI: 5.1242
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005135-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.2e-16222258135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  AHYPO_005135-RA 222 CQHCGISEksTPAMRRGPSGPRTLCNACGLMWANKGT 258
                      *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.54685120IPR010399Tify domain
SMARTSM009791.5E-485120IPR010399Tify domain
PfamPF062001.4E-889119IPR010399Tify domain
PROSITE profilePS5101712.769153195IPR010402CCT domain
PfamPF062031.1E-15153194IPR010402CCT domain
SMARTSM004015.4E-13216269IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13219281No hitNo description
Gene3DG3DSA:3.30.50.101.8E-15220263IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.185220272IPR000679Zinc finger, GATA-type
CDDcd002021.28E-15221265No hitNo description
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
PfamPF003201.6E-13222258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEQSTAKQFE LHNQIAIMEE DDDTFDAEEF SNGDDDEEEL ELVDEEEEHV SIAIPGNTMK  60
MKNTSTNSGS ADRIFDASSS LSSLKRRRTS ELTIAFEGDV FVFPSVTPDK VQAVLLLLGG  120
QDMSTRVPTS EFLQQQHNKA LGDPSCGQKI SHRIASLVRF REKKKERCFD KKIRYTCRKE  180
VAQRMQRKNG QFVSLKDRYK QASANWDRND GTPPPECVPR SCQHCGISEK STPAMRRGPS  240
GPRTLCNACG LMWANKGTLR DLSKPLRIVP FRVDLDTPSN RKPVAMEPNN SYINQDMQRS  300
SEEAKILASV SGKTSTRENE QEALEEVNNG SGTEFEIPSG FEEAVGAFY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021717242.11e-170GATA transcription factor 24-like
SwissprotQ5Z4U52e-62GAT20_ORYSJ; GATA transcription factor 20
SwissprotQ8GXL79e-63GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0K9RKP21e-159A0A0K9RKP2_SPIOL; Uncharacterized protein
STRINGXP_010691384.11e-166(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-63ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]