PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005243-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 242aa    MW: 27246.3 Da    PI: 4.9339
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005243-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.52.3e-272282259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                     +Dg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v++s+ed+++ +i+Y+geH+++
  AHYPO_005243-RA 22 NDGFSWRKYGQKDILGAKFPRGYYRCTYRhskGCAATKQVQQSNEDQSIYQIMYKGEHTCS 82
                     8**************************998899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.5741679IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-271682IPR003657WRKY domain
SuperFamilySSF1182901.09E-242082IPR003657WRKY domain
SMARTSM007743.4E-382183IPR003657WRKY domain
PfamPF031068.4E-272281IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
METKWTKIVK ISTNGSLEGV HNDGFSWRKY GQKDILGAKF PRGYYRCTYR HSKGCAATKQ  60
VQQSNEDQSI YQIMYKGEHT CSQGVQIKKD QNSPIQGQQL QPQPPQRLQN SQQDIYVGIG  120
AEGDIKVESE DELIDRAKIF RSFSFTQAHL QPDSIEDNNL LSFCPSFVSP ATSYNCIPVS  180
PFHSIRTHEG LSVQTQEVDF HEAISGMGTL INTPIMDVSD DFQFTLDDLL DFCDNSSFDQ  240
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-2023791874Disease resistance protein RRS1
5w3x_D5e-2023791874Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021760340.19e-88probable WRKY transcription factor 41
TrEMBLA0A0K9R5K53e-78A0A0K9R5K5_SPIOL; Uncharacterized protein
STRINGXP_010669256.11e-69(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-36WRKY family protein