PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005257-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 505aa    MW: 57185.3 Da    PI: 4.8961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005257-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-1465115155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr ++ +gr++AeIrdp+    +  r++lg++ ta +Aa a++ a+  ++g
  AHYPO_005257-RA  65 KKYRGVRKRP-WGRYAAEIRDPK----TgLRHWLGTYYTAVDAATAYDTAAIFFRG 115
                      59********.**********95....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-1665121No hitNo description
SuperFamilySSF541711.24E-1766122IPR016177DNA-binding domain
PfamPF008478.9E-766115IPR001471AP2/ERF domain
PROSITE profilePS5103220.12666123IPR001471AP2/ERF domain
SMARTSM003802.7E-3066129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-2666121IPR001471AP2/ERF domain
PRINTSPR003677.2E-76778IPR001471AP2/ERF domain
PRINTSPR003677.2E-789105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MVRISVRDDE ATDSSGDESE SQPSCSRVVK CVTEIRFQRS LPTPVDDERN KKGVQENQID  60
NEEKKKYRGV RKRPWGRYAA EIRDPKTGLR HWLGTYYTAV DAATAYDTAA IFFRGSKART  120
NILPPPLPDD VVTSSHPGEV NGRKSSSLEE SCSPHSVLSC EELQSPTDSS KTQNKEDGRE  180
SESSGEFERR RDGGCFGREL VYVKEIVKAT DGVLIDRIPG ITGESDGGRS AGVLFDRKPK  240
ITGETYRGRT DHFLVVLKPE ITGETDRSLN GVLFDRVPEI VRETERRNDG VLMDWILRLF  300
GEIDRRTDVV LFDREPEISG ETERRSDGVL FGWKPEINGE TDRRTDGVLF HRKPETALRK  360
DGVCFDHNPV ITGETERRND GAWFGRKPVI TGETERRNDG GLFDRKRKRT GETEKIKDDV  420
CLYGGPETAC GFGSGYLNED WLLNEEKDLH DYFCFNGEDR MIFDDHISDL TMIHDDHISD  480
LPVIHDDHKQ LSSTFDFYGD DLFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1765121158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-19cytokinin response factor 4