PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005263-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 420aa    MW: 44602 Da    PI: 7.6976
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005263-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.22.8e-21277339163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elk+errkq+NRe+ArrsR+RK+ae+eeL+++v++L+aeN  Lk+e+++l ++++kl+ e+
  AHYPO_005263-RA 277 ERELKKERRKQSNRESARRSRLRKQAETEELARRVEALSAENIGLKSEINQLMENSKKLRLEN 339
                      89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-32193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.5E-25130251No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-17271336No hitNo description
PfamPF001705.4E-20277339IPR004827Basic-leucine zipper domain
SMARTSM003382.0E-19277341IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.863279342IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.25E-10280335No hitNo description
CDDcd147022.85E-20282330No hitNo description
PROSITE patternPS000360284299IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGSSEDPKSP KSEKLSPPAT EQNGVHVYPD WAAMQAYYGP RVALPPYFSS AVAPGHPPPP  60
YMWGPPQPMV PPYGAPYAAI YAPGGVYAHP AIPLGSQAHG QAVTSPIVNE IPVATPLSID  120
TPVKSSGNAE KGLLKKLKGF DGLAMSIGNG NAEKAEGDME NVVSQSAETE GSSNGSDGNT  180
EADQVKRKRS REGTPTTVAV EDEKIETKTV ISPADKVMGV PVTPVNGATA QAMGTVVSPV  240
VATTLELRNP GINVKGNSAA VSPPNAAVST EAWLQNEREL KKERRKQSNR ESARRSRLRK  300
QAETEELARR VEALSAENIG LKSEINQLME NSKKLRLENA TLSKLKCLQS GQGEENGITN  360
VDIKLNPSDS TENLLSRMNN SGSIRASEEG TDMYEKSTNS GTKFHQLLKN RRADAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293299RRSRLRK
2293300RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021748041.10.0common plant regulatory factor 1-like
RefseqXP_021748042.10.0common plant regulatory factor 1-like
RefseqXP_021850808.10.0common plant regulatory factor 1-like
SwissprotQ990891e-131CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLO499360.0O49936_SPIOL; Basic leucine zipper protein
STRINGXP_010669464.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-81G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]