PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005288-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 136aa    MW: 15393.2 Da    PI: 8.8479
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005288-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.79.9e-08901133659
                      EEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  36 kkversaedpkvveitYegeHnhe 59 
                      k+v+r ++d ++v++tYeg Hnh+
  AHYPO_005288-RA  90 KQVQRLSKDSSIVVTTYEGVHNHP 113
                      9**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-86488IPR003657WRKY domain
SuperFamilySSF1182907.06E-1370114IPR003657WRKY domain
PROSITE profilePS5081112.50771115IPR003657WRKY domain
SMARTSM007744.2E-1176114IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-690113IPR003657WRKY domain
PfamPF031062.5E-490113IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MNSPSVIDDE VHQESNSCCD DLGNNNGGNN ENIINKKENN MKKIVGNNNK NNNWRSRKGL  60
MIPRFAFKTK SSEDILDDGY RWRKYGQKSK QVQRLSKDSS IVVTTYEGVH NHPCEKLMEA  120
LSPLLSQMQF LSSLT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849039.15e-44probable WRKY transcription factor 75
SwissprotQ9FFS32e-35WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A371F1I43e-39A0A371F1I4_MUCPR; Putative WRKY transcription factor 24 (Fragment)
STRINGXP_010669789.12e-39(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.13e-37WRKY DNA-binding protein 24