PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005350-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 303aa    MW: 33894.4 Da    PI: 7.6335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005350-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.4e-182777155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aa+a+++a+  l+g
  AHYPO_005350-RA 27 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAARAYDEAACLLRG 77
                     79********.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.01E-172784No hitNo description
SuperFamilySSF541719.15E-192786IPR016177DNA-binding domain
PfamPF008471.9E-122777IPR001471AP2/ERF domain
PROSITE profilePS5103219.6122885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-272885IPR001471AP2/ERF domain
SMARTSM003801.5E-342891IPR001471AP2/ERF domain
PRINTSPR003673.4E-72940IPR001471AP2/ERF domain
PRINTSPR003673.4E-75167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEISTSNMNK IPINNNVAKF KPKPKRSKFV GVRQRPSGRW VAEIKDTTQK IRMWLGTFET  60
AEAAARAYDE AACLLRGSNT KTNFVVTHIS HNSPLASRIK NLLKNKNLES KNTNNHLISD  120
HNNHVANNGI SPLIIPSSSN TYNNNIAFPN PPSNSPTSIL ATPTIYSTTT HQNYANLGYK  180
NLDTFCLQDV YRPQINGFVG NYDLVNYTSL LDCDKYISPT MENLPLTLIG QSQDVHEMPK  240
NDQVVVPSTI LEMQKIKMEE MTIPTLNDIA SNGIQDYFDF LHDPSIDSLW DLPPLHSSFC  300
PI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021738209.12e-87ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0K9QV322e-62A0A0K9QV32_SPIOL; Uncharacterized protein
STRINGXP_010693871.11e-54(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-26related to AP2 11