PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005401-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 292aa    MW: 30819 Da    PI: 10.043
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005401-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-073458226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k ++C  f+ t  C++G++C+F H 
  AHYPO_005401-RA 34 KSKPCTKFYSTSGCPFGESCHFLHH 58
                     7789********************5 PP
2zf-CCCH26.61e-0895120227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC+ f     Ck+Gd+C+FaHg+
  AHYPO_005401-RA  95 KTRLCSKFNSAEGCKFGDKCRFAHGE 120
                      8***********************96 PP
3zf-CCCH34.53.5e-11258282126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+lC +f + G C +Gd+C+FaHg
  AHYPO_005401-RA 258 YKTKLCENFTK-GSCTFGDKCHFAHG 282
                      9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0613259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1783260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-63359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-83458IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-53458IPR000571Zinc finger, CCCH-type
SMARTSM003560.001593120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.06193121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-1294124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-794124IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-695120IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.48E-14159236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.1E-15164234IPR004088K Homology domain, type 1
SMARTSM003221.2E-11164234IPR004087K Homology domain
PROSITE profilePS5008413.816165229IPR004088K Homology domain, type 1
CDDcd001051.33E-13167230No hitNo description
PfamPF000134.7E-10167230IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.1E-16254287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8257287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.755257284IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-8257283IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-9258282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDARKRGRGE AGVVNANGGF KKQKKELEIG IGSKSKPCTK FYSTSGCPFG ESCHFLHHIP  60
GGYQAVTQMI NRPLISKVAP SPPPQALNGS DSGVKTRLCS KFNSAEGCKF GDKCRFAHGE  120
WQLNKPVAPS FDDPRVMGAH PMHGRFPGRI EPPAPTGLAA GFGASATAKI SVHANLAGPI  180
IGKNGVNSKQ ICRQTGVKLS IRNHDTDSTK KNIELEGTFD QIKIASDMVH DLVATLSVNG  240
SFKASGGTPA HGPASNSYKT KLCENFTKGS CTFGDKCHFA HGAAELRNSG N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128ARKRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845235.11e-157zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R04e-96C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9RDP71e-156A0A0K9RDP7_SPIOL; Uncharacterized protein
STRINGXP_010672666.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-53C3H family protein