PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005408-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 354aa    MW: 37794.7 Da    PI: 8.0751
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005408-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP139.49.6e-4470145176
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      +CqvegC++dls+ak y++rhkvC +hsk+p+v+vsgleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  AHYPO_005408-RA  70 RCQVEGCKVDLSDAKPYYSRHKVCAMHSKSPNVIVSGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 145
                      6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-3564132IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.5368145IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-4169149IPR004333Transcription factor, SBP-box
PfamPF031104.6E-3371144IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MIMEKSSKYQ TVVEGSLNNS SLSSDSLNGL KFGQKIYFED VGGSSSGKSS SSTSSKKGGK  60
GVVQSGQPPR CQVEGCKVDL SDAKPYYSRH KVCAMHSKSP NVIVSGLEQR FCQQCSRFHQ  120
LPEFDQGKRS CRRRLAGHNE RRRKPPPGSL LSSRLGRLSS SLYGDNASRS GGFVLDFSAY  180
STHPERDLWL GSETSEQVSG QSRSIIWPGS ASGSSFSFPS GECITGVSSD SSCALSLLSN  240
QTWSSGNHSS GTGLGNSMNI DGAAVTQCTT PHCVSVAHLP NNSSSWGFKG DNDPDCGLHA  300
VPSGHLGLGQ FSPQPFSGQF HGDLLMEQVP QYMGMDHSRV YDSASSNHVD WSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32711441184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021770402.11e-166squamosa promoter-binding-like protein 17
SwissprotA3C0577e-64SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A0K9QU541e-147A0A0K9QU54_SPIOL; Uncharacterized protein
STRINGXP_010672689.11e-158(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-38squamosa promoter binding protein-like 9