PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005409-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 404aa    MW: 44427.4 Da    PI: 8.4794
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005409-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31.1e-10172211541
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                      k  rr+++NReAAr+sR+RKka++++Le    + ++Le+e
  AHYPO_005409-RA 172 KTLRRLAQNREAARKSRLRKKAYVQQLESsriRLAQLEQE 211
                      7789***********************9632255555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-8165215No hitNo description
SMARTSM003385.7E-7168254IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.22170214IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-7172214No hitNo description
PfamPF001707.3E-8172211IPR004827Basic-leucine zipper domain
PROSITE patternPS000360175190IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MMQSSPSSSS LPGNNFMGSG KENNSNTSNN TTGAYDLGEL DQALFLYLDG QTDHEQLRQN  60
HNSSSTSSPG GGGTGGGMRP PTLNIFPSQP MHVEPSTKAN AGGLQGGGQS RPSEQSPPIE  120
LSNNNNNNNN NNKNKLKNDL PAEQSKSIKR EGNRKGPTSS SEQEGPKTPD PKTLRRLAQN  180
REAARKSRLR KKAYVQQLES SRIRLAQLEQ ELQRARAQGI FFGGGLGGGG DQGIPVGVSN  240
ISSDAAVFDL EYTRWLEEHH REWSQNPTFF ILFRIILHQI EPLSDQQLMG ICGLQQSTQE  300
AEDALSQGLD ALQQSLSDVI ASDSLSCPPN MNNYMGQMAL AMNKLSTMEN FVRQADSLRH  360
QTLHRLHQIL TTRQAARCFL TIAEYFHRLR ALSSLWMARP RQE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672705.11e-166PREDICTED: transcription factor TGA2.1
SwissprotQ52MZ21e-145TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A445AIE91e-154A0A445AIE9_ARAHY; Uncharacterized protein
TrEMBLA0A445ECP01e-153A0A445ECP0_ARAHY; Uncharacterized protein
STRINGXP_010672705.11e-165(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.25e-71bZIP family protein