PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005447-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 219aa    MW: 25276.9 Da    PI: 10.3686
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005447-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-203079255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  AHYPO_005447-RA 30 TYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAALAYDEAARRLYG 79
                     69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.53E-312989No hitNo description
PROSITE profilePS5103222.6423087IPR001471AP2/ERF domain
PfamPF008471.5E-133079IPR001471AP2/ERF domain
SMARTSM003802.2E-353093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-303088IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-213088IPR016177DNA-binding domain
PRINTSPR003671.7E-103142IPR001471AP2/ERF domain
PRINTSPR003671.7E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MENLRKTPLS KPWKKGPARG KGGPQNATCT YRGVRQRTWG KWVAEIREPK KRTRLWLGSF  60
ATAEEAALAY DEAARRLYGP DAYLNLPHLR CNFNPLNKSQ RFRWFPSKNF ISMFPSSNPS  120
NSSSLLNINV QPSVHVIHQR LQEFRNYKTN KCEPKMIMNK DKRVIQEIDD DKPQIDLHEF  180
LEQMGVLKDD EETEFNKIDE KGIKGAIRMP SKSRGLSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-183192667ATERF1
3gcc_A6e-183192667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724093.11e-112dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX53e-76DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A0K9RUZ41e-108A0A0K9RUZ4_SPIOL; Uncharacterized protein
STRINGXP_010672841.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-55ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]