PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005452-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 646aa    MW: 71114.6 Da    PI: 6.4625
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005452-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.7e-06279299526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd C +aHg
  AHYPO_005452-RA 279 PCPEFRK-GACRKGDMCEYAHG 299
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.27E-1515135No hitNo description
SuperFamilySSF484032.18E-1616145IPR020683Ankyrin repeat-containing domain
PfamPF127963.7E-952124IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.2257150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.375787IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.7E-1659144IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.07592127IPR002110Ankyrin repeat
SMARTSM002489.3E-492124IPR002110Ankyrin repeat
SMARTSM003562.1E-5274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.756279301IPR000571Zinc finger, CCCH-type
SMARTSM0035631309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MTHLTDETAD VLSNLLEVCA NNDVEGFRRL IEDDPSGVDD FGQWYVRKKG SKPMVFVHIT  60
PLMVASLYGS IDILKLILSL SMVDVNRPCK EDKSTALHCA ASGGSVNAVD AVKLLLEAGA  120
DHNALDADGR RPFDVIMVSP NRNDVKFALE ELLAGHGSIS ERILRVSTTT NSNSPQLSSS  180
PINGYPSSSS DSPPSPLNSK LDDPQAISYT SEKKEYPIDP SIPDIKNSIY ASDEFRMFSF  240
KIRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PEFRKGACRK GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGLI CARRVCFFAH TPDELRSLYV STGSAVPSPR SSVSSSMDFA  360
GAMNFLPGSP SSLMSPPAFA TPMSPSAHNN ISHSSLDWLQ PDVPSLRLPG SNLQSSRLRS  420
SLNARDISAE EFDMLQDYDL QQQQQLLNKF SCCSLNPNPL TCPKPSNLDD LFFAESSSPR  480
YNDQGIGSRA YSPTHNSPVF NQFQQQQGLL SPIKTNFSPN SIVEHPLISG RMSPRNMEPI  540
SPMSSRASII TQRQHQLHQL RSLSSRELGS NLGAIVGSPI HSLSGWGSSH GKPDWGTNTD  600
ELGKLRRSSS FEFGNNSDEP DFSWVQALVK ESSPTEIKEN GSGET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858675.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0K9QCP20.0A0A0K9QCP2_SPIOL; Uncharacterized protein
STRINGXP_010672777.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]