PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005550-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 230aa    MW: 24911.1 Da    PI: 7.2342
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005550-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.35.9e-294105197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dCv++p++     +++q++++ +++k++G++ +l+ll+a p++ r+ +++sl+yeA+ r+ dP+yG+vg++ ++q++ +q
  AHYPO_005550-RA   4 SCNGCRVLRKGCSDDCVIRPCLvwmksADAQANATVFLAKFYGRAGLLNLLNAGPNHLRPGIFQSLLYEACGRVVDPIYGSVGLLYSGQWHHCQ 97 
                      6*********************9999666889************************************************************** PP

           DUF260  90 lkaelall 97 
                      l+++++l 
  AHYPO_005550-RA  98 LAVDAVLK 105
                      *9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9823109IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MRTSCNGCRV LRKGCSDDCV IRPCLVWMKS ADAQANATVF LAKFYGRAGL LNLLNAGPNH  60
LRPGIFQSLL YEACGRVVDP IYGSVGLLYS GQWHHCQLAV DAVLKGLPII QLSPSNSPPN  120
INTTTSPSSN TQFMFMPPLK LYDIRHMSKD HHQSSPPTSV IPTGPRCPHL PAFDSDHDCD  180
DVSTAAGDST EGSSSIAGCH NNNNNNNNNN NNVHLELTLG FNKLSDMQY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856656.12e-95LOB domain-containing protein 41-like
SwissprotQ9M8864e-70LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A291LR166e-70A0A291LR16_BRARR; Transcription factor LBD41a
STRINGGSMUA_Achr3P29520_0012e-70(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-63LOB domain-containing protein 41