PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005555-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 576aa    MW: 65724.2 Da    PI: 7.941
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005555-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.71.2e-16228261134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C+tt+Tp+WR gp g ktLCnaCG+ y++ +
  AHYPO_005555-RA 228 CLHCKTTETPQWRTGPMGRKTLCNACGVQYKHGR 261
                      99*****************************987 PP
2GATA45.69.5e-15500533134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C +t Tp+WR gp g  tLCnaCG+ +r  +
  AHYPO_005555-RA 500 CLHCESTRTPQWRPGPMGRNTLCNACGVQFRNGR 533
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.9E-16222276IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.925222258IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-13226276No hitNo description
Gene3DG3DSA:3.30.50.102.9E-14226259IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-12227276No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003201.9E-14228261IPR000679Zinc finger, GATA-type
SMARTSM004018.8E-13494548IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227494530IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.18E-12495549No hitNo description
Gene3DG3DSA:3.30.50.105.0E-12499531IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.11E-11500548No hitNo description
PROSITE patternPS003440500525IPR000679Zinc finger, GATA-type
PfamPF003201.6E-12500533IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MAASENMGSA IARIEDGDSS KSDDEKGNNL IPSNQFLCGQ ELKLGIVNQY GQLMGEYSRL  60
DDDLWLSNSL DDEPVEKTNE ELQWGLIPSC ENTVELADRL HKSVCDGSMV SVEGESSFVK  120
DNSYNQHQGL SPVSVLRTRM SDIDVKTRMH PQSQHHQPMK HNSLGTLQSL GITLSARGQI  180
QTFQSESENL MKSAVVDESD NSVSAKEVRT RTVSDLLELD YEPAAKKCLH CKTTETPQWR  240
TGPMGRKTLC NACGVQYKHG RLFSNYRPLR SPTFDPSLHT YLPKRVQDMR SNPIKRCPIP  300
IPKPKKVAKK TPTFDLSHSS LDKKIQEMIL GKTLERCPIS THKPNEVEET SSEFDPSLGF  360
NLDNEPQEMI LLNKIERHLY PTPKPNEIEE RVPDLNVSLN SSCAETLEMR INNISDRKQR  420
LTFEPEGVEE MRLDNNNEKD QNRAQRAKKF EEIRLDNNNE KYQNRAKRAK KFEEMRESNH  480
NFDSKSNLKR KRQSKAVKMC LHCESTRTPQ WRPGPMGRNT LCNACGVQFR NGRLFPEYRP  540
LNSPTYDPSL HSHLPKQVEK MRMSKVTTCT IPYQE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010681549.12e-92(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-25GATA family protein