PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005567-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 397aa    MW: 44057.5 Da    PI: 6.0886
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005567-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.62.7e-08141162425
                      XCHHHCHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKk 25 
                       k  rr+++NReAAr+sR+RKk
  AHYPO_005567-RA 141 QKTLRRLAQNREAARKSRLRKK 162
                      6889*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.6E-6139162No hitNo description
PfamPF077161.1E-4140162IPR004827Basic-leucine zipper domain
PROSITE patternPS000360145160IPR004827Basic-leucine zipper domain
PfamPF141443.6E-30200274IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MQGFRDLYYH PTFIYRGENE GTTRNIQELD PPVVFNQQDA VDLSPSGFCG LRSSNNVLFS  60
SSLPLGASNS NNYGGASERG EVIGEKKGQL EYWGETAMAD TSQQTDTSTD VDTDDKTLYG  120
IVQNGAVMDS TDQSKGKIED QKTLRRLAQN REAARKSRLR KKGFIVSGVG TEPGHSLGTN  180
GVVAFDVHYG VWLDKHQKLI NDTRSALNSH HSDDELQVLV ESLMSHYDEL FRIKGNAAKS  240
DIFHLLSGMW KTPAERCFMW LGGFRSSEYL KILVNHLEPL TEQQLMGICN LQQSAQQAED  300
ALSQGMEALQ QSLVDTLSAN CLGPCSSGVV ADYMGQMAMA MGKLATLENF VHQADLLRQQ  360
TLQQMHRILT TRQAARALLV IHDYSTRLRA LSSLWLA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667846.10.0PREDICTED: transcription factor TGA2 isoform X1
SwissprotO241601e-137TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A0J8B2050.0A0A0J8B205_BETVU; Uncharacterized protein
STRINGXP_010667846.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-129bZIP family protein