PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_005581-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 332aa MW: 37153.1 Da PI: 6.2845

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_005581-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	1.9e-11	160	188	3	31
HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas 31 ++h+e+ErrRR+riN+ +++Lr+llP+ + AHYPO_005581-RA 160 KSHSEAERRRRERINNHLAKLRSLLPSTT 188 79************************963 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.601	157	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-8	160	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-9	160	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-8	161	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	4.9E-5	229	285	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MNSNTSENIN HQQQQQDHHH QQDQQNNIIT QNNNSLEMQQ YHHHHHQSGM VFPDLSSNPH 60 PIQSQPHILP WDFSQIHSFP QTHDPFFFPS SSSYGGLFTR RPSNSLQFAY EGCSSDHLRL 120 LSDALGPMVQ PGSAPFGLQA ELNKMTAQEI MDAKALAASK SHSEAERRRR ERINNHLAKL 180 RSLLPSTTKE LRRQTSMIAE TSVIPTETDE LTVDQASEEH DGKFIIKASL CCDDRSDLLP 240 DLIKALKTLQ LKTLKAEITT LGGRVRNVLV VTHEPNSNNQ LEDDENEEDS SQCSISSIHE 300 ALKAVMEKSG GDDQSNSGNP KRQRTANICI S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010681418.1	1e-167	PREDICTED: transcription factor bHLH30
Swissprot	Q9S7Y1	6e-87	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0K9QFP5	1e-146	A0A0K9QFP5_SPIOL; Uncharacterized protein
STRING	XP_010681418.1	1e-167	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_005581-RA

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]