PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_005619-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 177aa MW: 20973.3 Da PI: 6.5117

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_005619-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.6	7.4e-15	67	125	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r+rr+++NRe+ArrsR RK+ ++eL v L +eN L+++l++l++ +k +e+ AHYPO_005619-RA 67 RRQRRMISNRESARRSRMRKQRHLDELWSQVIRLRNENNNLIDKLNQLSESHDKILQEN 125 79************************************************999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-15	63	127	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.4E-12	65	120	No hit	No description
PROSITE profile	PS50217	11.588	65	128	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.9E-13	67	125	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.19E-13	67	117	No hit	No description
CDD	cd14702	3.60E-17	68	119	No hit	No description
PROSITE pattern	PS00036	0	70	85	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MYPSDIITSN INYLNSPQIP LQLQFQYTPN INLLNLPNNN YNNNNNNLPT SDDNSEEIQE 60 IKIIDERRQR RMISNRESAR RSRMRKQRHL DELWSQVIRL RNENNNLIDK LNQLSESHDK 120 ILQENVKLKE EATDLRDMIS SMQLDTTYHC LRDLETDCIS IRHCNTAHLR AESSSNH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021755873.1	8e-64	basic leucine zipper 43-like
Swissprot	Q9FMC2	2e-33	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A0J8C8A5	5e-54	A0A0J8C8A5_BETVU; Uncharacterized protein
STRING	XP_010681295.1	4e-61	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	6e-44	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	AHYPO_005619-RA

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]