PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005651-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 346aa    MW: 38495.2 Da    PI: 8.6254
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005651-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.31.4e-14268293126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ +++tGtC+yGd C++aHg
  AHYPO_005651-RA 268 FKTELCNKWQETGTCPYGDHCQYAHG 293
                      79***********************8 PP
2zf-CCCH17.95.6e-06306330125
                      --S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                      ykte Cr  +++  C+yG rC+F H
  AHYPO_005651-RA 306 YKTEVCRMVLAGDPCPYGHRCHFRH 330
                      9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-18262300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-11264299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.333267295IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-9267294IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-12268293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-11301331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-8301334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821305333IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4305332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MQQETMTSSK TMNRISSPAQ YSDIFNPPPY SSIFFHSTSS PTSIVTSSKT SSYDNSTPTK  60
ESVANAAAKN LSILMSEHKD LMKRHALCLK QLQKTFKEAE NLRQENTNLR MANLELGNQV  120
NLLIQTTLKN RYQTVSISDY TEQSGSSSLS SSSEKFGGGY AKERENEGLK EGFVSQSQSP  180
TKLTMENSES EIEKDEEARV TLPKSISVRS NGFLKMNQTS GAGNNSSLSP ATRIRAPSPV  240
SGPQKVYVRG GSKKDGPIEL EVYNQGMFKT ELCNKWQETG TCPYGDHCQY AHGINELRPV  300
IRHPRYKTEV CRMVLAGDPC PYGHRCHFRH ALTDEEKLML PLRLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-21268330466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844986.11e-163zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F54e-79C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0K9QNV41e-162A0A0K9QNV4_SPIOL; Uncharacterized protein
STRINGXP_010681714.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-78C3H family protein