PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005668-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 209aa    MW: 23935.8 Da    PI: 4.7305
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005668-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.71.9e-2741124184
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f k+ltpsdv+k++rlv+pk++a ++  ++  + +l+++d+  + W+++++y+k+s+++v+t+GW++Fv+ +gL+++D+v+F++
  AHYPO_005668-RA  41 FRKELTPSDVGKLNRLVIPKRYALKYFPIQDHDLELVFYDQGMKNWKFRYCYWKSSQSFVFTRGWNKFVRVKGLEAKDIVTFYM 124
                      89************************666667889***********************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-3238125IPR015300DNA-binding pseudobarrel domain
CDDcd100179.99E-2640124No hitNo description
SuperFamilySSF1019365.36E-2740125IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-2541125IPR003340B3 DNA binding domain
PROSITE profilePS5086312.80241149IPR003340B3 DNA binding domain
SMARTSM010193.4E-2041133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MIKDGSYQIK FGEYLGSITQ VQNGVTCDQK KQDGLVCQEL FRKELTPSDV GKLNRLVIPK  60
RYALKYFPIQ DHDLELVFYD QGMKNWKFRY CYWKSSQSFV FTRGWNKFVR VKGLEAKDIV  120
TFYMCELKGD KSDGNENNQF WMIDVVKGGD CDGRDRHEEE EEEGDEEEGS SSSVNEGEET  180
DSASAKGFRL FGVEIVPLHV NVSMDSVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-273712210100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676971.19e-82PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P52e-49RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0K9RYJ92e-75A0A0K9RYJ9_SPIOL; Uncharacterized protein
STRINGXP_010676971.13e-81(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-48RAV family protein