PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005707-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19850.3 Da    PI: 5.0781
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005707-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.72e-202068149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ++i nk ++qvtfskRr g++KKA+ LS  C+a++avi fs+ gkl+ +
  AHYPO_005707-RA 20 EPITNKNKKQVTFSKRRVGLFKKANDLSLTCGADIAVITFSPAGKLFSF 68
                     5799******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-261271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.4081272IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-241387IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-171434IPR002100Transcription factor, MADS-box
PfamPF003191.2E-222268IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-173449IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-174970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MASSMGKIKR TTGKTKIAIE PITNKNKKQV TFSKRRVGLF KKANDLSLTC GADIAVITFS  60
PAGKLFSFGN PNSDDVIHRF FQNDDIESKI DDGKLGSFSD DIVANECLPR GQDCDYKNGY  120
WWDRDIDDMK LSELEEFKVA LEGLRDDVAT KIGVSSKINN NNSDPISFEW IYWSDY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853088.11e-40agamous-like MADS-box protein AGL62
TrEMBLA0A0K9Q8436e-39A0A0K9Q843_SPIOL; Uncharacterized protein
STRINGXP_010686161.15e-36(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-26AGAMOUS-like 61