PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005710-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 639aa    MW: 69098.9 Da    PI: 6.677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005710-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-123994381155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  AHYPO_005710-RA 399 RRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 438
                      8******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.684388437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13392443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-15399446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15399461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9399438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-12399442No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MPLTELVRMF KGKVEVSQDG SSNSIDPSSR PDTDCVELVW ENGQIMMHGK PRKNPISNNT  60
QTFGSKSQDG KIANNLKITK FSQMDSIMAE LPMSVPSCEM SLDQDVDLVP WLNYHMDEPL  120
HNDYTSDFLN ELSGVTINDL PSGNLLANRE KKTNVHGDGS HDTSMTLKHG HTPKPPSSIE  180
KDSRVGSSEV PQCLLPSQHS VGAPRDSLLN SPSLSAFTSL RLQKLDAGQT ITSSGFTNFP  240
YFSRPAAFSR ASPVTIDRIK RLENDDNRCT LASSNPVNFT RANLDSGGIV SRKQPVMPSA  300
NVNSEDLCSA KEPLHREEIT KNQMSPNQVC DDSTKKVGAS GDKIIEPAVA ASSVCSGNSF  360
DRTSNEPSRN LKRKSRETAE SSGPSEEGEE ESMAAKKPRR RDRINEKMRA LQELIPNCNK  420
ADKASMLDEA IEYLKTLQLQ VQILSMGSGL YMQPMMLPPG MQHIQGAHMP HFSPMGLGMG  480
MGMGYGMNML NMGGGAKMAP FQGLHYPIPG TGPTFPGMPG SSLQAFPHPG QGLPMSMQQP  540
PVIPPPMARS LMPMGPNASG VAETTNAPLI TSSSGKKDTN PQAILSSVAS NVVNSSLNLE  600
TNQASNDGIQ RYVMSHNQAQ DVNPSDTEVA NRKKTMDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104506.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_019104507.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_019104508.10.0PREDICTED: transcription factor PIF3 isoform X1
TrEMBLA0A0K9RD810.0A0A0K9RD81_SPIOL; Uncharacterized protein
STRINGXP_010674470.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-33phytochrome interacting factor 3