PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005727-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YB
Protein Properties Length: 181aa    MW: 21111 Da    PI: 8.2103
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005727-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB123.68e-391811797
            NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                     mkk +P+n+kisk++ke vq cvsefisf+t+easdkc++ekrkt+ngdd++wal +l fe+y+  l++yl+kyr++e+ek
  AHYPO_005727-RA  1 MKKSVPNNGKISKESKEAVQRCVSEFISFITGEASDKCRKEKRKTVNGDDIIWALRELDFENYATLLRIYLNKYRDMENEK 81
                     9*****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-37185IPR009072Histone-fold
SuperFamilySSF471138.72E-30190IPR009072Histone-fold
PfamPF008083.5E-19155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.1E-161937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.1E-163856No hitNo description
PRINTSPR006153.1E-165775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKKSVPNNGK ISKESKEAVQ RCVSEFISFI TGEASDKCRK EKRKTVNGDD IIWALRELDF  60
ENYATLLRIY LNKYRDMENE KLNMIHNHNY HHHTRCIPLI ENYNQGLVRE ESEKLNLPKQ  120
QYFLPKLSPY STFSPQVNFP MLDQSFSTPP LTSLPLKHEI NEQIDSNSKT SQVQFFFSCC  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-311761792Transcription factor HapC (Eurofung)
4g92_B4e-311761792Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193571.11e-39nuclear transcription factor Y subunit B-like
RefseqXP_017622853.12e-39PREDICTED: nuclear transcription factor Y subunit B-like
TrEMBLA0A484KC531e-40A0A484KC53_9ASTE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.11e-39nuclear factor Y, subunit B7