PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005743-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YC
Protein Properties Length: 234aa    MW: 26574.8 Da    PI: 6.3663
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005743-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC153.24.9e-4853154199
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw++q    ++a dfknh+lPlarikki+k+d++v+mis++aP+ll++ace+fi +ltlrsw+ +ee+kr+tl+k+di+aa++ td fdf
  AHYPO_005743-RA  53 QLRTFWNNQnleSKQAIDFKNHSLPLARIKKIMKSDDNVHMISSDAPILLARACEMFIQDLTLRSWNSTEETKRKTLQKADISAALSTTDLFDF 146
                      89******997667899***************************************************************************** PP

            NF-YC  92 lvdivprd 99 
                      lvdivpr+
  AHYPO_005743-RA 147 LVDIVPRE 154
                      ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.87E-3126147IPR009072Histone-fold
PfamPF008081.4E-2275138IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.8E-3376153IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDPHWNTPHY YNHIHQQLPP LINNPSDQTP LQNHQQHPPY SSTPEGSNLL QQQLRTFWNN  60
QNLESKQAID FKNHSLPLAR IKKIMKSDDN VHMISSDAPI LLARACEMFI QDLTLRSWNS  120
TEETKRKTLQ KADISAALST TDLFDFLVDI VPREKPVISH VMPMNHSRLS TMGLQQLEGY  180
NPVGEGTGVN MGLQQIQHDD QVDHGGMNVS KYYDQGGWPT YMSNQSGWPP PDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-4364153695NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021761063.18e-83nuclear transcription factor Y subunit C-4-like
TrEMBLA0A0K9RLI33e-77A0A0K9RLI3_SPIOL; Uncharacterized protein
STRINGXP_010694015.11e-81(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-48nuclear factor Y, subunit C9