PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005804-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 136aa    MW: 15080.5 Da    PI: 8.6948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005804-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.8e-0633721054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  AHYPO_005804-RA 33 KERKEKLGEKITALQQLVSPY-----GKTDTASVLLEAMEYIRFL 72
                     778899999*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-62077No hitNo description
Gene3DG3DSA:4.10.280.105.7E-112182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-132286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.2332372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-42978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTELKRSVQP IDPNSFTPVE SKRQKVDMSM SSKERKEKLG EKITALQQLV SPYGKTDTAS  60
VLLEAMEYIR FLHEQVKVLS APYLQNTPVT NMEELIHYTL RSKGLCLVPI ECTAGLPGSN  120
GADIWAPIKT GSPRF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845542.12e-86transcription factor bHLH153 isoform X2
SwissprotQ7XJU22e-55BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0K9RQ206e-85A0A0K9RQ20_SPIOL; Uncharacterized protein
STRINGXP_010672412.12e-81(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.58e-58bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]