PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_005898-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 497aa MW: 54274.3 Da PI: 6.227

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_005898-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H AHYPO_005898-RA 67 FICEICSKGFQRDQNLQLHRRGH 89 89*******************88 PP
2	zf-C2H2	10.6	0.0018	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H +++ AHYPO_005898-RA 144 WKCERCSKKYGVQSDWKAHVKVC 166 58*****************9987 PP
3	zf-C2H2	12.5	0.00043	174	192	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++++H + AHYPO_005898-RA 174 DCGTVFSRRDSFVTHRAFC 192 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.8E-5	66	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.9E-6	66	89	No hit	No description
PROSITE profile	PS50157	10.783	67	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.047	67	89	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	109	139	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.9E-6	139	164	No hit	No description
SMART	SM00355	160	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MAQLELDNSL SSTYTNQQAQ EHHDELCLDQ QLQPPPSKKR RNQPGMPDPE AEVIALSPTT 60 LLATNRFICE ICSKGFQRDQ NLQLHRRGHN LPWKLRQRSP TQPVKKRVYI CPEPTCVHHN 120 PTRALGDLTG IKKHFCRKHG DKKWKCERCS KKYGVQSDWK AHVKVCGSRE YMCDCGTVFS 180 RRDSFVTHRA FCDALAKESD LPIGNVPSLV GPSPQPCEMQ ENEVVVKSTT SSATCSTSSI 240 SNYKDIDHNN DNDNMGFHTS MFAPLSGFTP SISHNPASSF SDLLTTSSNS NNLSTYPIET 300 SSNSNNLSTY PIEPLPVLTL SPLYQFQTPA SLLQDHDNYS AVLPQQPVMS ATALLQKATQ 360 TGAAATSGSS RFCGFDLISQ DQNTENSSVK LENQGTFPDR IGLSLPSSRS FDESGPMMSD 420 PSTYFGSTPT TLDFLGLGNS SDAAHAYLAS IDSTVDVAGA TCESGNESIV KVSWDAQIAQ 480 RAPSNSVEGE SGYEPT*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MAQLELDNSL SSTYTNQQAQ EHHDELCLDQ QLQPPPSKKR RNQPGMPDPE AEVIALSPTT  60
LLATNRFICE ICSKGFQRDQ NLQLHRRGHN LPWKLRQRSP TQPVKKRVYI CPEPTCVHHN  120
PTRALGDLTG IKKHFCRKHG DKKWKCERCS KKYGVQSDWK AHVKVCGSRE YMCDCGTVFS  180
RRDSFVTHRA FCDALAKESD LPIGNVPSLV GPSPQPCEMQ ENEVVVKSTT SSATCSTSSI  240
SNYKDIDHNN DNDNMGFHTS MFAPLSGFTP SISHNPASSF SDLLTTSSNS NNLSTYPIET  300
SSNSNNLSTY PIEPLPVLTL SPLYQFQTPA SLLQDHDNYS AVLPQQPVMS ATALLQKATQ  360
TGAAATSGSS RFCGFDLISQ DQNTENSSVK LENQGTFPDR IGLSLPSSRS FDESGPMMSD  420
PSTYFGSTPT TLDFLGLGNS SDAAHAYLAS IDSTVDVAGA TCESGNESIV KVSWDAQIAQ  480
RAPSNSVEGE SGYEPT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-29	140	198	3	61	Zinc finger protein JACKDAW
5b3h_F	1e-29	140	198	3	61	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010664668.1	1e-124	PREDICTED: protein indeterminate-domain 2 isoform X2
Swissprot	Q9LVQ7	1e-114	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A438K1P9	1e-123	A0A438K1P9_VITVI; Protein indeterminate-domain 1
STRING	VIT_18s0001g12220.t01	1e-123	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-103	C2H2 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_005898-RA

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]