PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005913-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 272aa    MW: 31328.4 Da    PI: 8.3621
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005913-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.1e-35261172102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+yei++d++ ++++ w e++++f+v+ +++fa+ +Lp+yFkhsnf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+k+ll+
  AHYPO_005913-RA  26 FLSKTYEIVDDPKSDDIVCWGEHESTFIVWRPSQFARLLLPNYFKHSNFSSFVRQLNTYGFRKIVPDR---------WEFANEYFKRGHKHLLC 110
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k+
  AHYPO_005913-RA 111 EIHRRKT 117
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3720110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-5722115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.07E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-182649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGVLEDNCEG NIIVSLDTIR SVPAPFLSKT YEIVDDPKSD DIVCWGEHES TFIVWRPSQF  60
ARLLLPNYFK HSNFSSFVRQ LNTYGFRKIV PDRWEFANEY FKRGHKHLLC EIHRRKTGQI  120
QQSTNINFSN TNNMLSYRRC LSLSPPPNTA ESDCSPPLST PKSYVHTTLI TTLLEDNEKL  180
RRSNTHLMSE ITHMKKLYND ILNYFVHNYN SFKPVSYPFV GISSNLDQFV KKSSNVDDDE  240
RNSNSNSNGC ETKIFGVAIA MQSKKRLHPE F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2221176131Heat shock factor protein 1
5d5v_B4e-2221176131Heat shock factor protein 1
5d5v_D4e-2221176131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019445707.13e-90PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-75HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1J7HC297e-89A0A1J7HC29_LUPAN; Uncharacterized protein
STRINGGorai.002G135200.13e-88(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-76heat shock transcription factor B4