PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_005915-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 248aa MW: 26654.5 Da PI: 5.0367

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_005915-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.7e-06	109	131	33	55
.TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 + s+K +Ka++L +A+eY+k+Lq AHYPO_005915-RA 109 NMSEKTDKASMLDEAIEYLKQLQ 131 5789******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.09E-7	107	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-7	108	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.63E-5	111	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MADLSPPHQP PSSSANFGVE SDDISSLLHT LLHNSSQPST SSSLPQLPGS AAFSQSPALF 60 DSSFPFSKGY YTSMEGIDDV ECHSEEEARM KSAAFKNSSK RSRAAEVHNM SEKTDKASML 120 DEAIEYLKQL QLQVQMLTLR NGSSSHPFYL PVAVQPPPGP FNEANNNGVG GSFTADEETS 180 MQAMFNLSSK PASDYKQAFV SDPSMTVNYR PFHSSMPAKV LCKDPALHQL QLDMSQCGQS 240 SSSGVSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021722565.1	2e-99	transcription factor ALC-like
TrEMBL	A0A0K9QBM4	3e-93	A0A0K9QBM4_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010688822.1	6e-71	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67110.3	3e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_005915-RA