PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005927-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB
Protein Properties Length: 270aa    MW: 29690.4 Da    PI: 8.3226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005927-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.9e-191358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd ll  +v+++G+++W++I++ ++ gR++k+c++rw + 
  AHYPO_005927-RA 13 KGPWSPEEDHLLQVLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding59.38.6e-1967109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tIar+++ gRt++ +k++w++ 
  AHYPO_005927-RA  67 PFTQEEDETIIRAHAKFGNK-WATIARMLN-GRTDNAIKNHWNST 109
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.589863IPR017930Myb domain
SuperFamilySSF466891.07E-3210106IPR009057Homeodomain-like
SMARTSM007174.4E-151261IPR001005SANT/Myb domain
PfamPF002494.3E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-261466IPR009057Homeodomain-like
CDDcd001671.08E-141557No hitNo description
SMARTSM007172.3E-1664112IPR001005SANT/Myb domain
PROSITE profilePS5129422.04965114IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2467113IPR009057Homeodomain-like
CDDcd001673.05E-1367110No hitNo description
PfamPF002493.3E-1667109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MATNSQRDMD RVKGPWSPEE DHLLQVLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PQVEHRPFTQ EEDETIIRAH AKFGNKWATI ARMLNGRTDN AIKNHWNSTL KRKCASMSGA  120
DFNGFEFDPS ESGPPLKRSA SVPPGSGLSL NPGSPSASNG SAVALPPESM EDPKTSLSLS  180
LPGSDEKSPI KENGSGSGSG SSKFLEPLSK ELMEVMQEMI KEEVRNYMED IKQRKQKQLI  240
EGYENNNGCY YPDEAAIANA MVKRMGIGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-39121143105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-381211457159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-381211457159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-39121143105C-Myb DNA-Binding Domain
1msf_C2e-39121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028080167.11e-101transcription factor MYB44-like
SwissprotO231607e-87MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2J6M9X51e-94A0A2J6M9X5_LACSA; Uncharacterized protein
STRINGcassava4.1_034350m5e-91(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-79myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]