PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005940-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 260aa    MW: 27882.2 Da    PI: 8.9573
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005940-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004493115123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ C+ksF +   L  H  +H
  AHYPO_005940-RA  93 YKCSVCDKSFGSYQALGGHKASH 115
                      9*********9999998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-1492117IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-892166No hitNo description
PROSITE profilePS501579.9193120IPR007087Zinc finger, C2H2
SMARTSM003550.008493115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
PfamPF139127.9E-9144168IPR007087Zinc finger, C2H2
SMARTSM003553.1144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642144166IPR007087Zinc finger, C2H2
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MALEALNSPT TPHAPFKFDD RSFDHFIKKK RSKRCRSDMS PPSTTAEHRL SEEEYLAFCL  60
LMLAKGGATK NNQNPLKIEK NDQNPEIDSK LVYKCSVCDK SFGSYQALGG HKASHRKPTG  120
EDNKPTSSSA TTSSVAAGVA GKSHQCSICF KCFPTGQALG GHKRCHYEGT IGGAKSGSGT  180
ASGVTASEGV GSSYSLSRGN GGSRDFDLNL PALPDFLPVD FFKVRNQSQG FCVDEEVESP  240
HPSKKPRLVL TMSKQGTNQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021759526.11e-113zinc finger protein ZAT10-like
TrEMBLA0A0K9RUY31e-105A0A0K9RUY3_SPIOL; Uncharacterized protein
STRINGXP_010688220.12e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-48salt tolerance zinc finger