PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005942-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 329aa    MW: 37261.1 Da    PI: 4.6107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005942-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-092512911055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR riN+++  L++l+P+      +K++ +++Le+A +Y+k Lq
  AHYPO_005942-RA 251 RKRRMRINERLRILQSLVPNG-----TKVDISTMLEEAFHYVKFLQ 291
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.764241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-12242305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-10246299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-8250295No hitNo description
PfamPF000102.4E-6251291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGAFLDGEWE SISKLFTVEE SPNLYADFLE YYSPESEQDE NNPANSFSKD ILFQENKTNY  60
STTITNNNNN NNNNNNNSDC FLPDILSCID FSNLNEEIEA SLGLSFPQNN DFHNINSNND  120
YSNSNDNNSM NVILPNVIKS APKRKRDLKV FEDNQEEVNV MEKPPKKNAR GLKGKRKANQ  180
KSEEDMKPNL YIKESNEIAD SNSDDSNAGC VSEEMNENAE SNSNTTLSLT STGKKRASRG  240
AATDPQSLYA RKRRMRINER LRILQSLVPN GTKVDISTML EEAFHYVKFL QLQIRLLSSD  300
DLWMYAPLAY NGLDVGAYRR LSPFIDHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233253KKRASRGAATDPQSLYARKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688183.11e-119PREDICTED: transcription factor bHLH54
STRINGXP_010688183.11e-119(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.18e-50ROOT HAIR DEFECTIVE 6-LIKE 2