PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005976-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRF
Protein Properties Length: 550aa    MW: 59362.1 Da    PI: 7.9499
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005976-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.28e-25209253145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  AHYPO_005976-RA 209 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 253
                      79****************************************985 PP
2QLQ56.77.1e-20137173137
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      ++FT++Q+ +L++Q+l+yKy++an P+Pp+Ll +i++
  AHYPO_005976-RA 137 GPFTPSQWLELEQQALIYKYIIANEPIPPNLLIPIRR 173
                      59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.6E-13137173IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.3E-15138172IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.139138173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954209253IPR014977WRC domain
PfamPF088793.6E-21210252IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEFGLLGLGG FPGSTNGFPS PSLDHPSKQK ETSRTSLDDT IHGECKPTKF AKLNEDLTPI  60
KNFLPSKHSS SSLAFFDGQQ ELNMLSFSSP KLDYKNPQIS AFPYFQLPNS YYNKTSGYSY  120
SCTENVANTY YLNGVRGPFT PSQWLELEQQ ALIYKYIIAN EPIPPNLLIP IRRAFESAGL  180
CTFPGGLLRP NTFGYGWGPF HLGLANNTDP EPGRCRRTDG KKWRCSRDAV PDQKYCERHI  240
NRGRHRSRKP VEGQSGHPIS GATTNKASNS ATTSSTSVVS GAGQSNNFAI NFDRSKDLQP  300
TSSLVNRLMV NKEKTGQETG LDLLSPKISL SSTGNTFSVT ESTVEDFAFL TSDAIYSTTK  360
TGSSVSRTYA QGSDAQQLSH IFADDHASIL WPKLQTQSDK TTADFMSSTS SPTGERNTLS  420
PLRLFRELDS VPMGLSSDTA VSNERSPISW ETSMGGPLGE VLKIPTSSSL GEKNKEVPAL  480
NLLSKGYGDG SPQLASSPTG VLQRTALGYF SNSSAGSSPR PENGKALESA SVCCDLIGFT  540
LASSSCLPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724225.10.0growth-regulating factor 1-like
TrEMBLA0A061FG661e-148A0A061FG66_THECC; Growth-regulating factor 1
STRINGEOY156571e-149(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.16e-68growth-regulating factor 1