PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005979-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 331aa    MW: 37342.5 Da    PI: 6.5574
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005979-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  AHYPO_005979-RA 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.118966IPR017930Myb domain
SMARTSM007173.8E-131364IPR001005SANT/Myb domain
PfamPF002493.7E-161462IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-2114100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-251579IPR009057Homeodomain-like
CDDcd001676.14E-101662No hitNo description
PROSITE profilePS500904.1936399IPR017877Myb-like domain
SMARTSM007172967101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-780109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDKIIL TQLPGRTDND IKNYWNTRLK KKLLGKQRRD QQQHSRNPSN  120
NLILKQEVMD NKMVNPISFT SSLYNNHNQF PFFPQLNLPN YSNSSNNFHG VSNNEDHNHT  180
STMKLLMKIE GDYDHTLNPN QIPFHNHHYP NIHNIDYPNN DIYTHEGLMV EGQSSTFPPE  240
IEALMSSNNG NNPQREVLDG LEFLYGGVGG GGGGAGGDYG GDHLVNNHEE MISMGSLPNL  300
ELDGNALIQG IEEEGSHFEE HMRYPNNVEL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-17141037108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021754682.11e-124transcription factor RAX3-like
SwissprotQ9FKL29e-70MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A072VEW31e-80A0A072VEW3_MEDTR; Myb transcription factor
TrEMBLA0A2P5X7363e-80A0A2P5X736_GOSBA; Uncharacterized protein
STRINGXP_010687509.11e-110(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-62myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]