PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_006004-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 338aa MW: 37000.2 Da PI: 6.221

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_006004-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+ss AHYPO_006004-RA 37 QQQALKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSS 97 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-33	39	95	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-26	40	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.702	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MQDVQQINGV VGGRVLLKHL QQQTHLQQHL QQQQQQQQQA LKCPRCDSIN TKFCYYNNYN 60 LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC RKSKRSSAKQ KSSSSSCSTT VDSLNSVKRV 120 SQNSANNSSS ESSTNNNTAA NNTVVGGGVG GLFQIPQTEN FGLSSDLDNN LFSAEIGGFI 180 GLISENNNDK HNINDDIKNN SEGFSVVDDG NGGGDLNGNG SVCEAATASF SEFLQNQGVQ 240 EWDMGKICGV HQEENQKIDF IDSTVRIEDL LQNRGSNVGL ASLDWHLTAD NNQSLFDVSD 300 NSTIDHQAYW NQSTTATHHH DSQWSDSTTS HLPLFLP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678379.1	1e-108	PREDICTED: dof zinc finger protein DOF5.4
TrEMBL	A0A0K9QL55	6e-83	A0A0K9QL55_SPIOL; Uncharacterized protein
STRING	XP_010678379.1	1e-107	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	5e-33	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	AHYPO_006004-RA