PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006045-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LFY
Protein Properties Length: 103aa    MW: 11563.1 Da    PI: 9.3169
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006045-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY186.12.8e-57184302385
          FLO_LFY 302 mrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385
                      mrhYvhCYalhcL+ee+snalr+afk+rgenvGawr acykplvaia+rqgwdida+fn+hprLsiWYvPtkLrqLCh+ers++
  AHYPO_006045-RA   1 MRHYVHCYALHCLNEETSNALRKAFKDRGENVGAWRLACYKPLVAIASRQGWDIDAIFNSHPRLSIWYVPTKLRQLCHAERSSS 84 
                      9********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016987.0E-55183IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MRHYVHCYAL HCLNEETSNA LRKAFKDRGE NVGAWRLACY KPLVAIASRQ GWDIDAIFNS  60
HPRLSIWYVP TKLRQLCHAE RSSSDRTTTA TSSISGAAHL SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A5e-5018380162PROTEIN LEAFY
2vy2_A5e-5018380162PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667025.13e-54PREDICTED: leafy/floricaula homolog FL1
RefseqXP_023873133.17e-56protein UNIFOLIATA-like, partial
RefseqXP_023902312.11e-54floricaula/leafy homolog
SwissprotO485591e-52UNI_PEA; Protein UNIFOLIATA
TrEMBLQ6QVW42e-58Q6QVW4_SALCC; Floricaula (Fragment)
STRINGXP_010667025.11e-53(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.14e-52floral meristem identity control protein LEAFY (LFY)