PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006049-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 252aa    MW: 28026.4 Da    PI: 6.1652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006049-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.98.9e-121141491755
              AP2  17 AeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      AeIrdp+    + +r++lg+f+tae Aa a+++a++k++g
  AHYPO_006049-RA 114 AEIRDPK----KaARVWLGTFDTAEAAALAYDEAALKFKG 149
                      9****94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-20105163IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-14113158IPR016177DNA-binding domain
PROSITE profilePS5103215.936114157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-21114158IPR001471AP2/ERF domain
PfamPF008475.3E-6120149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVDPREGKRP TMSFGGDDET REMSGYDEQY HQNIHHHSQD HGAYGVGDGS LVNFPVYSAR  60
SQYDMSAMVQ ALSQVIGNSS SNTSAQVDDV VNPTHIFHAN QTQTISFQPQ ASQAEIRDPK  120
KAARVWLGTF DTAEAAALAY DEAALKFKGN KAKLNFPERV QGKLNDSGYY LGSSTPQQNQ  180
QNIQVANYPY PHNQAPNYNL MMNPNYPQHE QNLSNYSSFG QYPSFDYSSY QASQSSSSYG  240
EDQIRKKLSH S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-151141601663ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021719375.12e-61ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH549e-37EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0J8B3U42e-46A0A0J8B3U4_BETVU; Uncharacterized protein
STRINGXP_010667007.14e-47(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]