PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_006083-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NF-YC

Protein Properties

Length: 256aa MW: 27657.2 Da PI: 5.8677

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_006083-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.5	6.4e-56	44	148	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdf AHYPO_006083-RA 44 QLQMFWSYQrqeIENANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDF 137 89***998899***************************************************************************** PP NF-YC 92 lvdivprdelk 102 lvdivprde+k AHYPO_006083-RA 138 LVDIVPRDEIK 148 ******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.52E-34	13	138	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.9E-37	58	130	IPR009072	Histone-fold
Pfam	PF00808	1.9E-20	66	129	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MEGNQQPPPP QPSQPPLPQS TTGYPSPTPH AAQYHHLLQQ QQQQLQMFWS YQRQEIENAN 60 DFKNHQLPLA RIKKIMKADE DVRMISAEAP ILFAKACELF ILELTIRSWL HAEENKRRTL 120 QKNDIAAAIT RTDIFDFLVD IVPRDEIKDE AAGLGMMPPT GIVPPTGIVG PPSGVGPTAS 180 GVPYYYPPMG QPAPGVMIGR PAIDPTGAAG MYATPPSTAW QNVWQGGHAP GDDGSYGSVP 240 NAGGNSAQGN LDAHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	9e-55	52	144	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	122	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021737460.1	1e-117	nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	9e-99	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	R0FL35	1e-107	R0FL35_9BRAS; Uncharacterized protein
STRING	XP_010695369.1	1e-107	(Beta vulgaris)
STRING	XP_006290279.1	1e-107	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	3e-96	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	AHYPO_006083-RA

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]