PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006113-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 207aa    MW: 23831.2 Da    PI: 9.1565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006113-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.21.9e-1576128155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      r+ +hn+ Er RR++i + ++ Lr llP+     +++Kls   ++ kAveYI +Lq
  AHYPO_006113-RA  76 RKLSHNASERVRRKKISNLYSSLRHLLPTtY---QKEKLSIPRTVVKAVEYIPKLQ 128
                      6889*************************77...*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85675127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1675145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-1276128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1376148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.71E-1376132No hitNo description
SMARTSM003536.0E-1081133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MFPDVFPNLL GWDEYPLELG TVHLEQEAFH TFNLDSIFQF SSYQPYKDYD QVKRSESPQG  60
NTSVTDDIDH DPKLARKLSH NASERVRRKK ISNLYSSLRH LLPTTYQKEK LSIPRTVVKA  120
VEYIPKLQKE VEELTRKKEQ VSSKLTKLVG NDSDTNQSKG VKKQIVKETM SSSISTHKVG  180
DKEMVIQISS LLENISFSKM LLLLEKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021741167.12e-62transcription factor ORG2-like
STRINGXP_010673162.14e-54(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-30bHLH family protein