PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006114-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 180aa    MW: 20638.9 Da    PI: 8.9925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006114-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.6e-152678155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     ++ +hn+ Er RR++i + ++ Lr llP+      +kKls   ++ k+veYI +Lq
  AHYPO_006114-RA 26 KKLSHNASERVRRKKISNLYSSLRALLPTnH---LKKKLSIPGTVVKVVEYIPELQ 78
                     6789*************************55...8999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.38E-142382No hitNo description
SuperFamilySSF474591.44E-152496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.1262577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-132698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-112678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-103183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MFTLSSFCPT LGWEYPIDQI VKDQTKKLSH NASERVRRKK ISNLYSSLRA LLPTNHLKKK  60
LSIPGTVVKV VEYIPELQQE VEDLIRKKEE LLSKLSKLQG NARDFILEEK PKNCIINETT  120
SFSISANKLG DKDLMIQISS FETIYLYEAL LLLEKNGYFV VDVSSFQSFG GITFYNIHLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836895.13e-74transcription factor bHLH101-like
TrEMBLA0A438DGB94e-41A0A438DGB9_VITVI; Transcription factor ORG2
STRINGXP_010673162.13e-67(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-32bHLH family protein