PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_006115-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 257aa MW: 29228.4 Da PI: 5.3184

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_006115-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.8e-11	136	171	4	40
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STC CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskK.lsK 40 +hn+ Er RR++iNs ++ Lr llP+ + +++ lsK AHYPO_006115-RA 136 NHNASERERRKKINSMYASLRALLPTtN---QKELlLSK 171 8*************************44...44434666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.18E-8	128	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.832	132	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.82E-8	133	172	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-8	133	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-8	136	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MLAMSSPICP NLGWEYPLEL GTYQNFDTFD LDYVFLPNSC DSTQDYHVNQ SESPQSTSSR 60 GNTSSINHCD YLNRNELLQG NTGSIDHYDK VNRSESLQGN MSSIDHYDNI NRSESLPGNT 120 SSTDQFDDPK LVKKFNHNAS ERERRKKINS MYASLRALLP TTNQKELLLS KIGAFHEEKC 180 EINPIINKET LSNCLISTNK LGNQEMVIQI SAFERTSINE ALLFLEKNHH FVIDVNSFQS 240 FGGRTFYNIH LWETIP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835344.1	1e-61	transcription factor bHLH101-like
STRING	XP_010673162.1	3e-57	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41240.2	5e-17	basic helix-loop-helix protein 100

Link Out ? help Back to Top
Phytozome	AHYPO_006115-RA