PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006211-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 231aa    MW: 25896 Da    PI: 4.7134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006211-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-1283135155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++ ah e Er+RR+++ + ++ Lr+ lP        ++ s ++   +Av+YIk+L+
  AHYPO_006211-RA  83 KKSAHRELERQRRQEMSNLYSSLRSELPDeY---IRGRRSASDHIAQAVNYIKDLE 135
                      689**************************77...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.6E-1180151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-1180139No hitNo description
SuperFamilySSF474592.49E-1481158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.51682134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-983135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-488140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFPYQNSNDE YFQTTDYVEQ QENEVENQNN QVDSGLGGAE GRSRRGRARG RGRGQSSTID  60
PNYNNAIDAS GPSNYNDDDD DQKKSAHREL ERQRRQEMSN LYSSLRSELP DEYIRGRRSA  120
SDHIAQAVNY IKDLEKNVKD LSNRRDELKA SPEWANPSYH VGGSSNPAPR PGSVMINPRV  180
GGLSIDIDVA YSDDNFSLST ALQLLFEEGL SVSSCTSTKV NDRIVHNIIC E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14453RGRARGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021730483.13e-82transcription factor bHLH118-like
TrEMBLA0A0J8BG102e-79A0A0J8BG10_BETVU; Uncharacterized protein
STRINGXP_010693676.14e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-37bHLH family protein