PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006212-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 208aa    MW: 23649.1 Da    PI: 4.5974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006212-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-1379131155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      rr  h e+Er+RR+++ + f+ Lr+ lP  +    ++K s ++ + +A++YI++L+
  AHYPO_006212-RA  79 RRILHRENERQRRQEMSNLFNSLRDSLPAeL---IQGKRSISDHVGEAINYIQHLK 131
                      7899*************************88...********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.04E-1076134No hitNo description
SuperFamilySSF474596.8E-1576151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.04978130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1079130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1179151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-584136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MFPFQRSCEL SFKISDDGEQ SEQNNLEDQI MFENNNVSVE LNNSTNSTTN NNNLGRGRGR  60
GRGRRSSLLA GANNDETERR ILHRENERQR RQEMSNLFNS LRDSLPAELI QGKRSISDHV  120
GEAINYIQHL KKNVMELEEK KNELKKSVES CSSTREIGES SNTGFTESCV VIRQSVVGFE  180
IEIIIGFDDE EFLLSNALQI VFDEGLDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021730188.11e-66transcription factor bHLH118-like
TrEMBLA0A0J8BC343e-63A0A0J8BC34_BETVU; Uncharacterized protein
TrEMBLA0A0K9RR146e-63A0A0K9RR14_SPIOL; Uncharacterized protein
STRINGXP_010693645.15e-64(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.15e-17bHLH family protein