PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_006290-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 169aa MW: 18727.9 Da PI: 9.5864

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_006290-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128	2.8e-40	23	82	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ s AHYPO_006290-RA 23 EQALKCPRCDSSNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNRRPS 82 7899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	13	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.5E-34	24	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.478	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MLMCTKSSNM EQQLEKKARP ADEQALKCPR CDSSNTKFCY YNNYSLTQPR YFCKSCRRYW 60 TKGGTLRNVP VGGGCRKNRR PSSSSSKRPT SSSSSSSSQN LMINSYDHPH GNISLFGNSY 120 FDIFGNPCGN NSSFFDTLRS GMVENNQLYY GVTNLGNVEN GGNVKGIT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	20	EKKARPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021746110.1	9e-65	dof zinc finger protein DOF2.1-like
Swissprot	O24463	1e-37	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	A0A1S4BLF5	3e-51	A0A1S4BLF5_TOBAC; dof zinc finger protein DOF2.1-like
STRING	XP_010689443.1	5e-64	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-36	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	AHYPO_006290-RA

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]