PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006308-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family S1Fa-like
Protein Properties Length: 93aa    MW: 10076.1 Da    PI: 10.7312
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006308-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA140.43.6e-442492270
             S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                     av ++eakG+nPGlivllv+gg+l++fl+gny+ly+yaqknlPP+kkkPvskkk+kre+lkqGva+PGe
  AHYPO_006308-RA 24 AVEEAEAKGFNPGLIVLLVIGGFLITFLIGNYVLYTYAQKNLPPKKKKPVSKKKMKRERLKQGVAPPGE 92
                     57899***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190138.0E-102492No hitNo description
PfamPF046893.0E-392892IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MILGLEGAFV TLTGLNLGLR HNKAVEEAEA KGFNPGLIVL LVIGGFLITF LIGNYVLYTY  60
AQKNLPPKKK KPVSKKKMKR ERLKQGVAPP GE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.22e-24DNA-binding protein S1FA
RefseqXP_024026346.12e-24DNA-binding protein S1FA
SwissprotQ423371e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLW9SCA32e-23W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.13e-24(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09735.12e-06S1FA-like DNA-binding protein