PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006339-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 371aa    MW: 41433.1 Da    PI: 6.9822
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006339-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53.1e-10131153426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +C+ ++rtG C +Gd C FaHg
  AHYPO_006339-RA 131 TICPEYRRTGGCTRGDECEFAHG 153
                      68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-6126157IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5127154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549128155IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8131153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-6131155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5160191IPR000571Zinc finger, CCCH-type
SMARTSM003561.6163186IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484163187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGSVCADHHH HHHHKFHPLI SPKKSLQDLN IPPRKLLSRR SDISEYYSPS SDAAAALMHK  60
FLPCNGDSSP KSDNDFDSDD DPYSSDEFRM YEFKIRKCTR SRSHDWTDCP FSHPGEKARR  120
RDPRRFHYSG TICPEYRRTG GCTRGDECEF AHGVFECWLH PARYRTEACK DGKNCKRKVC  180
FFAHSPRELR VLPVEDDGDD KHHKHQQQQQ QCCKYCCTLS PTSILGMSAN FSSPPMSPSL  240
SPPMSPMKAM TARGLAGLTR YSDRVSACGS NGLSYEDMVI ADILGSFDGI NLSETLSPNK  300
QGRGLWVDVN GYDNNGIADD YLSPSVFSSR NVFTANSDSS VSGAVFNTIN NNGTSVEDSP  360
DLGWVNELLM *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689060.11e-168PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA14e-77C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0K9QWU31e-150A0A0K9QWU3_SPIOL; Uncharacterized protein
STRINGXP_010689060.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.16e-69C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]