PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_006350-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

TCP

Protein Properties

Length: 242aa MW: 26663.6 Da PI: 7.8352

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_006350-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.3	5.9e-34	24	102	2	80
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssaseceaessss 80 +g kdrhsk+ T++g+RdRR Rlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i++l+++ + +s+s++ + AHYPO_006350-RA 24 TGSKDRHSKVFTAKGPRDRRLRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKASIDKLAQLppwdPMPSSSNT----VDV 102 688*************************************************************766633333222....111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.0E-31	24	112	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.384	26	84	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MGLKNRAARG EIVQVQGGHI IRGTGSKDRH SKVFTAKGPR DRRLRLSAHT AIQFYDVQDR 60 LGYDRPSKAV DWLINKAKAS IDKLAQLPPW DPMPSSSNTV DVNVESTGFP VAHHTGSSSF 120 FPTSNSNTIC FQNYPQADQF ILGNQDLCLS LHTLQDPRTH DPEILQGSRL SLGFDGGSGG 180 WPESQQPNDL GRFLFNTQGV LLGQQVTNPH RGTLQSNDFS PYFVRVSENH HDHQEISGIG 240 H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-21	31	84	1	54	Putative transcription factor PCF6
5zkt_B	1e-21	31	84	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010689747.1	1e-92	PREDICTED: transcription factor TCP4
Swissprot	Q9MAH8	3e-46	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A0K9QJY5	8e-72	A0A0K9QJY5_SPIOL; Uncharacterized protein
STRING	XP_010689747.1	4e-92	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	2e-46	TCP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_006350-RA

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]