PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006361-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 219aa    MW: 24186 Da    PI: 5.4207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006361-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-192877255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrdp++   ++r++lg+f++ae+Aa+a+++a+++++g
  AHYPO_006361-RA 28 KYRGVRKRP-WGRFAAEIRDPRK---KTRVWLGTFDSAEDAARAYDKAARQFRG 77
                     8********.**********843...6***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-132877IPR001471AP2/ERF domain
PROSITE profilePS5103224.0922885IPR001471AP2/ERF domain
CDDcd000185.65E-322887No hitNo description
SuperFamilySSF541712.09E-222887IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-322886IPR001471AP2/ERF domain
SMARTSM003802.5E-382891IPR001471AP2/ERF domain
PRINTSPR003678.2E-112940IPR001471AP2/ERF domain
PRINTSPR003678.2E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRRGRLMAKT TDPFQNGSTQ MDPSKNIKYR GVRKRPWGRF AAEIRDPRKK TRVWLGTFDS  60
AEDAARAYDK AARQFRGLKA KTNFPLSPPP FYRNDAVLVD ADDHRDVEMI QWPASSGMSS  120
TVESYNATQG IRISQNTTPV KVRVEEDCRS DCDSSSSVID EFNGEDCDDI GCSSVAVGLV  180
VGRKQALPFD LNLPPIDGGD GGLFFGFDDD YQATALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-212486164ATERF1
3gcc_A1e-212486164ATERF1
5wx9_A4e-2124851072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021755679.14e-74ethylene-responsive transcription factor 3-like
RefseqXP_021849043.13e-74ethylene-responsive transcription factor 3
TrEMBLA0A0K9R8147e-73A0A0K9R814_SPIOL; Uncharacterized protein
STRINGXP_010675777.12e-62(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-23ethylene responsive element binding factor 4